PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g07675.1.p
Common NameBRADI_5g07675
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 169aa    MW: 18627.9 Da    PI: 6.6205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g07675.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-055275123
                      EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                      ++C +Cg +F++    ++H+ + H
  Bradi5g07675.1.p 52 FECDICGFTFRTVKAIRTHMLSsH 75
                      89******************9988 PP

2zf-C2H217.61.1e-0589111123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C++Cgk F+++  L  H  +H
  Bradi5g07675.1.p  89 YICGHCGKQFRSWRALGGHRASH 111
                       89**************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.6E-55277IPR007087Zinc finger, C2H2
PROSITE profilePS501579.395280IPR007087Zinc finger, C2H2
SMARTSM003553.3E-45275IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.18E-852111No hitNo description
PROSITE patternPS0002805475IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-487115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.65589116IPR007087Zinc finger, C2H2
PfamPF139121.2E-789113IPR007087Zinc finger, C2H2
SMARTSM003550.0289111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAATRYVPRL TLSSSSSSGA DDGDEPPRYY PWRVKSAHEL DEGIIDPLHT SFECDICGFT  60
FRTVKAIRTH MLSSHPDADQ VVPPPIRWYI CGHCGKQFRS WRALGGHRAS HRGKKGCSLL  120
SKQERAEDFP AMVAAAAGAM RAPPAVVRDF DLNKPAPEEE QEEEDPPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3KQH71e-123A0A0Q3KQH7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3725723
Representative plantOGRP1137324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-07C2H2-like zinc finger protein